PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_019133-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 240aa    MW: 26584.7 Da    PI: 5.3168
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_019133-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.000126991123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   y+C+ C + F++   L  H+++H
  NNU_019133-RA 69 YTCTFCRREFRSAQALGGHMNVH 91
                   9********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.79E-66695No hitNo description
PROSITE profilePS5015711.1576996IPR007087Zinc finger, C2H2
PfamPF139121.8E-56992IPR007087Zinc finger, C2H2
SMARTSM003550.00666991IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807191IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MAAELGLLSL TQLQKLAQAQ QQPNPSFTAS PWMWNAKQQA QDDDDSWEVR AFAEDTGSIM  60
GTTWPPRSYT CTFCRREFRS AQALGGHMNV HRRDRARLRQ SPTAGSSDPS SSSNSSSTLI  120
IPTREFVPNG AYCLLYPLPS PTNAFTPTSS VNGCMDSPSN LLSVSPYLTN NWVSSCPPSM  180
NFPVAADIQV QASVCRSGRF GPPFYMRNEK EDDNNRNYDK ELVAEEVDLE LRLGQKPPPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-136491229superman protein
2l1o_A2e-136491229Transcriptional regulator SUPERMAN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010275242.11e-179PREDICTED: uncharacterized protein LOC104610368
TrEMBLE2IBP74e-88E2IBP7_VITVI; Palmate-like pentafoliata 1 transcription factor (Fragment)
STRINGPOPTR_0003s09000.12e-82(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.15e-39C2H2 family protein